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ClonePix 2 – Mammalian Colony Picker

A transformative cell line development workflow with automated clone screening and optional monoclonality assurance on day 0*

A complete solution for the automated screening and objective selection of high-value clones across diverse cell types.

The ClonePix® 2 Mammalian Colony Picker is a fully automated system for selecting high-value clones used in antibody discovery and cell line development. Screen more clones in less time with monoclonal verification on day zero, then screen and identify for highest producers in weeks, not months.

Hybridomas, CHO cells, stem cells and other cell types are imaged and selected based on user-defined parameters. Plate handling, barcode reading, and picking are fully integrated, and all data, including images, are saved for downstream analysis. The picker increases the probability of finding optimally produced cell lines and significantly reduces time and labor.

Automate antibody discovery and cell line development workflows

ClonePix 2 picker is 10x faster than labor-intensive limiting dilution and FACS. Our sophisticated software and integrated robotics enable a screening speed of > 10,000 clones per day.

Select cells with desirable attributes with monoclonality assurance from day 0

Easily screen and select clones based on protein productivity, antigen-specificity, cell viability, and expression levels of tagged recombinant proteins.

Increase the probability of identifying high-value clones while eliminating or recovering unstable clones early

Picking accuracy < 1 mm. Robotic picking reduces the risk of colony disturbance. Images of picked clones are stored with data.

Redefine clone screening and selection with transformative cell line development workflows

Empower your team with data analysis that automatically generates a map of clones and their secretion levels from a series of images generated in situ. The ClonePix can also be customized to include image-based monoclonality assurance on day zero.* This means your team can screen in one round and then pick for the highest produces in weeks, not months.

Redefine clone screening and selection with transformative cell line development workflows

Data analysis and tracking—reveal stable clones faster

Data analysis and tracking

Data Analysis

  • Automatically generate a 2D map of clones and their secretion levels from a series of images generated in situ
  • Screen and select colonies based on:
    • Size, roundness, and proximity to neighbors
    • Ranking according to fluorescence levels
    • Closely placed colonies ignored via user-controlled “proximity” software setting

Data Tracking

All relevant data associated with each colony (including images taken before and after picking along with their picking coordinates) are automatically saved for review and downstream analysis.

Enhanced for Monoclonality Verification*

Offering high-resolution single-cell imaging capability on day 0

The enhanced ClonePix 2 system can automatically screen and pick clones that are both high-producing and monoclonal—all in one system. Screen more clones in less time with monoclonal verification on day zero, then screen and pick the highest producers in less than two weeks.

Monoclonality Verification

Key Benefits:

  • Rapid Monoclonal Verification: Achieve image-based clonality verification on day zero, reducing screening rounds from two to one.
  • Advanced Imaging Capabilities: Rapid Z-stack acquisition allows detection of single cells throughout the medium volume, not just a single focal plane.
  • Streamlined Workflow: Simplified process from single-cell identification to productivity screening, enhancing efficiency with the all-in-one system.
  • Higher Throughput: Process up to 12,000 colonies on just 10 plates, significantly increasing laboratory productivity.
  • Cost-Effective Operations: Minimize operational costs through reduced manual labor, decreased media volume requirements, and enhanced processing speed.

Enhanced for stem cell applications*

Identify desirable, clonal stem cell colonies for high-throughput colony screening and picking

High-resolution imaging identifies desirable, clonal stem cell colonies for high-throughput colony screening and picking. Specialized picking pins allow the gentle transfer of adherent, feeder-free cells to high-density plates for clonal expansion and downstream analysis.

  • Colony formation – Individual stem cells plated at a low density in 6-well plates divide and develop into colonies. Plating density is kept low to ensure that colonies are derived from a single parent cell.
  • Clone screening – Clonally-derived stem cell colonies are identified by their desirable morphological characteristics and are picked from the low-density 6-well plates into higher density 96-well plates to carry forward with the screening. The ClonePix® 2 Mammalian Colony Picker can be customized with high-resolution optics and stem cell-specific pins, allowing this established technology to be leveraged in stem cell workflows.
  • Cell growth – Cell growth is determined by monitoring cell division over a given time using label-free imaging.
  • Functional screening – In addition to monitoring growth, functional cell-based assays can be performed. This can include assays assessing differentiation potential, pluripotency, ability to form 3D organoids, and other desirable traits.

ClonePix Kits

Additionally, consider integrating our specialized ClonePix Reagent Kits to further enhance your system’s capabilities. These kits provide optimized media for CHO cell line development and convert existing media to semi-solid form, ensuring colony integrity and enabling fast screening and high-value clone selection.

ClonePix 2 Mammalian Colony Picker ClonePix 2 Enhanced for Monoclonality Verification
Imaging
Software Dedicated imaging software pre-installed on a high-specification PC, Microsoft Windows 10 Dedicated imaging software pre-installed on a high-specification PC, Microsoft Windows 10 64-bit
White light imaging Trans-illumination for imaging low contrast colonies such as adherent mono layers or small colonies in suspension Epi-illumination for imaging colonies as they are collected Enhanced optical system capable of resolving single cells. Trans-illumination for superior contrast imaging. XY drive encoders for accurate image tiling Camera z stage control to allow rapid z-stack imaging.
Fluorescence Imaging Software-controlled switching between up to 5 excitation /emission filter pairs Software-controlled switching between up to 5 excitation /emission filter pairs Lumencor AuraIII light engine excitation source for improved FL excitation
Data tracking Internal barcode reader for source and destination plates enables data tracking for each run Internal barcode reader for source and destination plates enables data tracking for each run
Camera High-resolution CMOS camera (16-bit) 0.86X objective High-resolution CMOS camera, Basler 2048 X 2048-pixel, monochrome, selectable bit depth (8 or 12 bits), 4X objective
Imaging capture and transfer USB 1.0 USB 3.0
Imaging speed 6-well microplate: 5 min for 2 wavelengths (single plane, standard conditions) Single plane, WL only: <15 minutes/plate Single plane, WL&FL: <35 minutes/plate Stack Imaging, WL only: <45 minutes/plate* *assuming 1000um stack, 33um step size
Resolution Standard: 28 micron Resolving single cells: 10-18 um diameter
Z-Stack Imaging No Yes, day 0 stack imaging to allow capture of single cells And stack imaging for additional time points
Instrumentation
Containment Fully enclosed working environment with Class 100-type, HEPA filtration Fully enclosed working environment with Class 100-type, HEPA filtration
Destination plate type PetriWell-96 plate, Costar 96-well plate, Greiner 96-well plate, Nunc 96-well plate, Falcon 96-well plate Greiner 96-well plate, Corning/Costar 96-well, Corning/Falcon 96-well, Thermo Scientific/Nunc, Thermo Scientific/Matrix 96-well
Source plate capacity 10 plates 10 plates without robotic integration
Destination plate capacity 10 plates 10 plates without robotic integration
Picking head 8 x picking pins – each pin independently controlled 8 x picking pins – each pin independently controlled
Picking pin size Diameter of picking pins is application specific – F1: suspension cells, F2: adherent cells Application specific – F1: suspension cells (0.4 mm), F2: adherent cells (0.7 mm)
Wash bath Ethanol wash bath, automatically refilled Ethanol wash bath, automatically refilled
Picking system fluids 5 L sterile water supply, 5L waste bottle 5L sterile water supply, 5L waste bottle
Pin drying Proprietary halogen pin drying station Proprietary halogen pin drying station
Instrument dimensions 1010 mm (width) x 900 mm (depth) x 1490 mm (height) 1010 mm (width) x 900 mm (depth) x 1490 mm (height)
Instrument weight 350 kg 350 kg
Compressed Air Specifications
Air Clean, oil-free with sub-micron filtration Clean, oil-free with sub micron filtration
Minimum operating pressure 6 bar (~90psi) 6 bar ( ~90psi)
Minimum operating volume 80 L/min 80 L/min
Regulatory Approval
Compliance CE CE
Quality ISO9001:2008 certified ISO9001:2008 certified
Monoclonality Report No Yes, correlation of selected colonies on pick day back to day 0 XY location

Multiple detection methods

White light identifies and measures clone morphology, size and proximity. Fluorescence indicates expression level and/or specificity. Up to five fluorescent filters are available for multiplexing.

Sterility maintenance

A host of sterility features and options including a UV light process for sanitizing the interior of the instrument, as well as pin washing and halogen drying are standard.

Integrated plate storage

Includes two storage stacks for source and destination plates, each with a capacity of 10 plates.

Discrete colony formation

Semi-solid CloneMediaTM encourages single cells to grow into discreet colonies, and allows for ease of plating. The media allows for a higher density of clones to be screened. Efficient Icon Animal-free media and reagents Chemically defined and animal-free, CloneMedia cell-culture media, is optimized to increase productivity and aid in visualizing secreted antibodies when used with the CloneDetectTM detection agent.

Custom automation options*

The Advanced Workflow Engineering Solutions Team can customize the monoclonality system and offer added services such as integrated verification of monoclonality.

Cell Line Development

Cell Line Development generating biopharmaceutical molecules

Cell line development is a critical step in the process of generating biopharmaceutical molecules, such as monoclonal antibodies. The process often begins with transfecting the host cell type with the DNA encoding the therapeutic protein of interest allowing for random or directed integration of target DNA into the host cell genome. Thousands of clones are screened to isolate the rare high producing cells, a manual and time-consuming process.

Cell surface expression screening

Sàng lọc biểu hiện bề mặt tế bào

Many proteins that express to the surface of cells are targets for the discovery and development of biopharmaceuticals. For instance, G-protein coupled receptors (GPCRs) are the largest class of cell-surface proteins and are targets for almost 40% of existing drugs. Discovery and selection of high value clones with elevated cell surface expression of GPCRs from a transfected pool of cells can be challenging. The ClonePix 2 System represents an automated method of screening large populations of cells that increases the probability of finding rare high-affinity binder or high producer.

Clone productivity screening and titer

Sàng lọc năng suất và chuẩn độ bản sao

An important component in identifying high-value clones is determining productivity of single cell-derived colonies. Screening for productivity using traditional approaches is laborious and time consuming, generally consisting of a multistep process that involves isolating single cells from limiting dilution followed by assessment of titer using ELISA. The ClonePix 2 system combines phenotype selection, single-cell isolation and productivity screening into a single step, resulting in dramatically shorter screening times and increased number of candidates.

Drug Discovery & Development

Drug Discovery & Development Process

For every drug that makes it to the finish line, another nine don’t succeed. This alarming failure rate can be traced to reliance on 2D cell cultures that don’t closely mimic complex human biology, often leading to inaccurate predictions of a drug’s potential and extended drug development timelines.

Hybridoma screening

Sàng lọc tế bào lai

Antibody discovery typically refers to the screening and identification of monoclonal antibodies (mAbs) that target a specific epitope for the diagnosis and treatment of diseases. A common approach to generating monoclonal antibodies involves the fusion of a pre-mitotic cancer cell with a post-mitotic and terminal antibody-expressing B-cell from the spleen. The resulting fused cell is called a hybridoma and has the advantage of producing mAbs while dividing to regenerate itself. Screening hybridomas for binding specificity or productivity can be automated using the ClonePix 2 and the Octet HTX systems.

Monoclonal Antibody Discovery

Phát hiện kháng thể đơn dòng

Antibody discovery typically refers to the screening and identification of specific antibodies that target an antigen molecule for the diagnosis and treatment of diseases. The specificity of the antibody is based on its ability to bind the epitope, a unique region on the antigen molecule. Therapeutic antibodies are typically monoclonal, single cell-derived and target a unique epitope region on the antigen. The ClonePix 2 System automates screening and rapid detection of antigen-specific clones from a heterogenous population of cells.

Monoclonality

Phát triển dòng tế bào và đảm bảo tính đơn dòng

Cell line development and assurance of monoclonality are critical steps in the process of generating biopharmaceutical molecules, such as monoclonal antibodies. A cell line can be established following the isolation of a single viable cell robustly expressing the protein of interest. A key milestone in this process is documenting evidence of clonality. Documentation of clonality is typically image-based, whereby an image of a single cell is produced and included in regulatory filings.